My scientific papers and publications
Principal or senior author
- S. Jhavar, A. Reid, J. Clark, Z. Kote-Jarai, T. Christmas, A. Thompson, C. Woodhouse, C. Ogden, C. Fisher, C. Corbishley, J. De-Bono, R. Eeles, D. Brewer, C. Cooper, Detection of TMPRSS2-ERG translocations in human prostate cancer by expression profiling using GeneChip Human Exon 1.0 ST arrays. J Mol Diagn., Jan 2008; 10(1):50-7. [Link]
- D. Brewer, M. Barenco, R. Callard, M. Hubank and J. Stark, Fitting Ordinary Differential Equations To Short Time Course Data. Phil. Trans. Roy. Soc. A, 2007. [Link]
- D. Brewer, Modelling the p53 gene regulatory network. University of London, 2006, PhD thesis. [Free Link]
Other author
- C. J. Shepherd, S. Rizzo, I. Ledaki, M. Davies, D. Brewer, G. Attard, J. de Bono, D. L. Hudson, Expression profiling of CD133(+) and CD133(-) epithelial cells from human prostate. Prostate 2008; . [Free Link]
- S. L. Hockley, V. M. Arlt, D. Brewer, R. Te Poele, P. Workman, I. Giddings and D. Phillips, AHR- and DNA-damage-mediated gene expression responses induced by benzo(a)pyrene in human cell lines. Chem Res Toxicol. Dec 2007; 20(12):1797-810. [Link]
- M. Barenco, S. Shah, D. Brewer, R. Callard, J. Stark, C. Miller and M. Hubank, rHVDM – A Fast and User-Friendly R Package to Predict Transcription Factor Targets from Microarray Time Series Data (published abstract). BMC Systems Biology, 2007; 1 (Suppl 1):S1. [Link]
- S. L. Hockley, V. M. Arlt, D. Brewer, I. Giddings and D. Phillips, Time- and Concentration-dependent Changes in Gene Expression Induced by Benzo(a)pyrene in Two Human Cell Lines, MCF-7 and HepG2. BMC Genomics. 2006; 7:260. [Free Link]
- M. Barenco, J. Stark, D. Brewer, D. Tomescu, R. Callard and M. Hubank, Correction Of Scaling Mismatches In Oligonucleotide Microarray Data, BMC Bioinformatics. 2006; 7:251. [Free Link]
- M. Barenco, D. Tomescu, D. Brewer, R. Callard, J. Stark and M. Hubank, Ranked Prediction of p53 Targets Using Hidden Variable Dynamic Modelling (HVDM), Genome Biology, 2006; 7:R25. [Free Link]
- J. Stark, D. Brewer, M. Barenco, D. Tomescu, R. Callard and M. Hubank, Reconstructing Gene Networks: What Are the Limits? Biochemical Society Transactions . 2003; 31:1519-1525. [Link]